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KMID : 0364820170530040347
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Korean Journal of Microbiology
2017 Volume.53 No. 4 p.347 ~ p.350
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Genome sequence of carotenoid producing Sphingobacteriaceae bacterium SH-48 isolated from freshwater in Korea
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Choi Ah-Young
Chung Eu-Jin
Nam Young-Ho
Choi Gang-Guk
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Abstract
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We sequenced the genome of the Sphingobacteriaceae bacterium SH-48 isolated from the Sohan stream in Republic of Korea by using a dilution-to-extinction culturing method. The sequences were assembled into a draft genome containing 5,650,162 bp with a G + C content of 35.4% and 4,856 protein-coding genes in 2 contigs. This strain contains the carotenoid biosynthesis genes crtY, crtZ, crtD, crtI, crtB, and crtH as gene clusters. This genomic information provides new insights into the carotenoid biosynthesis pathway.
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KEYWORD
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carotenoid biosynthesis, freshwater, genome sequencing
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